; mapping file for the FF: AA_ions_Wang21.v1.1
rename OP1 O1P
rename OP2 O2P
rename O2' O2*
rename O3' O3*
rename O4' O4*
rename O5' O5*
rename C1' C1*
rename C2' C2*
rename C3' C3*
rename C4' C4*
rename C5' C5*
ignoreRes PSU
ignoreRes H2U
ignoreRes 2MG
ignoreRes OMG
residue 2MA C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 CM2 N1 N3 N6 N7 N9 O1P O2* O2P O3* O4* O5* P
; residue 2MG C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 CM2 N1 N2 N3 N7 N9 O1P O2* O2P O3* O4* O5* O6 P
residue 3AU C1* C10 C11 C12 C13 C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 N40 O1P O2 O2* O2P O3* O30 O31 O4 O4* O5* P
residue 4OC C1* C2 C2* C3* C4 C4* C5 C5* C6 CM2 CM4 N1 N3 N4 O1P O2 O2* O2P O3* O4* O5* P
residue 4SU C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4* O5* P S4
residue 5MC C1* C2 C2* C3* C4 C4* C5 C5* C6 CM5 N1 N3 N4 O1P O2 O2* O2P O3* O4* O5* P
residue 5MU C1* C2 C2* C3* C4 C4* C5 C5* C5M C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue A C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N3 N6 N7 N9 O1P O2* O2P O3* O4* O5* P
residue A0P C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N3 N6 N7 N9 O2* O3* O4* O5* %first
residue A3 C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N3 N6 N7 N9 O1P O2* O2P O3* O4* O5* P %last
residue ADE C2 C4 C5 C6 C8 N1 N3 N6 N7 N9
residue ALA C CA CB N O
residue ALAC C CA CB N O OXT %last
residue ALAN C CA CB N O %first
residue ARG C CA CB CD CG CZ N NE NH1 NH2 O
residue ARGC C CA CB CD CG CZ N NE NH1 NH2 O OXT %last
residue ARGN C CA CB CD CG CZ N NE NH1 NH2 O %first
residue ASN C CA CB CG N ND2 O OD1
residue ASNC C CA CB CG N ND2 O OD1 OXT %last
residue ASNN C CA CB CG N ND2 O OD1 %first
residue ASP C CA CB CG N O OD1 OD2
residue ASPC C CA CB CG N O OD1 OD2 OXT %last
residue ASPN C CA CB CG N O OD1 OD2 %first
residue K K 
residue MG MG
residue BCA BCA
residue BZN BZN
residue C C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 N4 O1P O2 O2* O2P O3* O4* O5* P
residue C0P C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 N4 O2 O2* O3* O4* O5* %first
residue C3 C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 N4 O1P O2 O2* O2P O3* O4* O5* P %last
residue CYS C CA CB N O SG
residue CYSC C CA CB N O OXT SG %last
residue CYSN C CA CB N O SG %first
residue G C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N2 N3 N7 N9 O1P O2* O2P O3* O4* O5* O6 P
residue G0P C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N2 N3 N7 N9 O2* O3* O4* O5* O6 %first
residue G3 C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N2 N3 N7 N9 O1P O2* O2P O3* O4* O5* O6 P %last
residue G3P C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N2 N3 N7 N9 O1A O1B O1G O2* O2A O2B O2G O3* O3A O3B O3G O4* O5* O6 PA PB PG %first
residue GLN C CA CB CD CG N NE2 O OE1
residue GLNC C CA CB CD CG N NE2 O OE1 OXT %last
residue GLNN C CA CB CD CG N NE2 O OE1 %first
residue GLU C CA CB CD CG N O OE1 OE2
residue GLUC C CA CB CD CG N O OE1 OE2 OXT %last
residue GLUN C CA CB CD CG N O OE1 OE2 %first
residue GLY C CA N O
residue GLYC C CA N O OXT %last
residue GLYN C CA N O %first
;residue H2U C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue HIS C CA CB CD2 CE1 CG N ND1 NE2 O
residue HISC C CA CB CD2 CE1 CG N ND1 NE2 O OXT %last
residue HISN C CA CB CD2 CE1 CG N ND1 NE2 O %first
residue ILE C CA CB (CD1 CD) CG1 CG2 N O
residue ILEC C CA CB (CD1 CD) CG1 CG2 N O OXT %last
residue ILEN C CA CB (CD1 CD) CG1 CG2 N O %first
residue LEU C CA CB CD1 CD2 CG N O
residue LEUC C CA CB CD1 CD2 CG N O OXT %last
residue LEUN C CA CB CD1 CD2 CG N O %first
residue LYS C CA CB CD CE CG N NZ O
residue LYSC C CA CB CD CE CG N NZ O OXT %last
residue LYSN C CA CB CD CE CG N NZ O %first
residue M2G C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 CM1 CM2 N1 N2 N3 N7 N9 O1P O2* O2P O3* O4* O5* O6 P
residue MA6 C1* C10 C2 C2* C3* C4 C4* C5 C5* C6 C8 C9 N1 N3 N6 N7 N9 O1P O2* O2P O3* O4* O5* P
residue MET C CA CB CE CG N O SD
residue METC C CA CB CE CG N O OXT SD %last
residue METN C CA CB CE CG N O SD %first
residue MIA C1* C11 C12 C13 C14 C15 C16 C2 C2* C3* C4 C4* C5 C5* C6 C8 N1 N3 N6 N7 N9 O1P O2* O2P O3* O4* O5* P S10
residue OMC C1* C2 C2* C3* C4 C4* C5 C5* C6 CM2 N1 N3 N4 O1P O2 O2* O2P O3* O4* O5* P
; residue OMG C1* C2 C2* C3* C4 C4* C5 C5* C6 C8 CM2 N1 N2 N3 N7 N9 O1P O2* O2P O3* O4* O5* O6 P
residue OMU C1* C2 C2* C3* C4 C4* C5 C5* C6 CM2 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue PHE C CA CB CD1 CD2 CE1 CE2 CG CZ N O
residue PHEC C CA CB CD1 CD2 CE1 CE2 CG CZ N O OXT %last
residue PHEN C CA CB CD1 CD2 CE1 CE2 CG CZ N O %first
residue PRO C CA CB CD CG N O
residue PROC C CA CB CD CG N O OXT %last
residue PRON C CA CB CD CG N O %first
;residue PSU C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue SER C CA CB N O OG
residue SERC C CA CB N O OG OXT %last
residue SERN C CA CB N O OG %first
residue THR C CA CB CG2 N O OG1
residue THRC C CA CB CG2 N O OG1 OXT %last
residue THRN C CA CB CG2 N O OG1 %first
residue TRP C CA CB CD1 CD2 CE2 CE3 CG CH2 CZ2 CZ3 N NE1 O
residue TRPC C CA CB CD1 CD2 CE2 CE3 CG CH2 CZ2 CZ3 N NE1 O OXT %last
residue TRPN C CA CB CD1 CD2 CE2 CE3 CG CH2 CZ2 CZ3 N NE1 O %first
residue TYR C CA CB CD1 CD2 CE1 CE2 CG CZ N O OH
residue TYRC C CA CB CD1 CD2 CE1 CE2 CG CZ N O OH OXT %last
residue TYRN C CA CB CD1 CD2 CE1 CE2 CG CZ N O OH %first
residue U C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue U0P C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O2 O2* O3* O4 O4* O5* %first
residue U3 C1* C2 C2* C3* C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P %last
residue UR3 C1* C2 C2* C3* C3U C4 C4* C5 C5* C6 N1 N3 O1P O2 O2* O2P O3* O4 O4* O5* P
residue VAL C CA CB CG1 CG2 N O
residue VALC C CA CB CG1 CG2 N O OXT %last
residue VALN C CA CB CG1 CG2 N O %first
